Mendeley and Beyond – Here's what happened at #MDOD15

After an amazing Mendeley and Beyond, Open Day 2015, we’ve just about managed to re-collect our thoughts and tell you how it went… It was wonderful! We really enjoyed meeting so many of our Advisors, Users, Librarians, Usability Testers, Partners and colleagues. A big thank you to everyone who joined us in our new home in AlphaBeta – we look forward to seeing you again next year!

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Top Features announced at #MDOD15

Mendeley Data
22670784627_51ff24ff4b_kThe new Mendeley Data repository is designed to help you do more with the data that comes out of your research, allowing you to publish your data, share it, and make it available for other researchers. This data platform allows researchers to upload the raw data from their research, where it is give it a unique identifier that makes that data citable. The aim is to move beyond the tradition research article and enable researchers to show their workings, and most importantly get credit for that.

Heliyon Submission Channel
Mendeley is launching the first journal on it’s new submission channel. “Heliyon is the perfect journal to introduce this new pillar of Mendeley. It’s innovative in every sense, cross-discipline and, most importantly, open access” says Paul Foeckler, Co-founder and Integration Director of Mendeley. Our aim is to help people publish in a seamless way connecting relevant stages of their workflow and accelerate the process of making and disseminating new discoveries.

Mendeley Goes Social
22696870339_1a52e5375b_kThere have been several development in Mendeley recently. You may have noticed that your profile now features enhanced statistics information to provides any published author with an aggregated view on the performance of their articles. Additionally, you’ll be able to import your publications from Scopus, which has the highest-quality source of data on published articles, and for articles published on ScienceDirect we additionally provide information on views, search terms used to get to your article, map of where your readership comes from, and provides links to various source data providers.

Not only that (why stop there?!), you’ll be getting improved article suggestions, which will provide four different recommendation algorithms to support different scientific needs, which will be regularly recalculated and tailored, ensuring that there is always something new for you to discover.

 

But that’s not all that happened!

Breakout sessions
In the afternoon, we held some smaller group breakout session where attendees had the opportunity to find out more and give there feedback about Mendeley data, BibTeX/LaTex, Data Science, the Mendeley API and   – all the while being guided by some New Orleans-inspired Second liners.

Eye Art
Our visitors also had the chance to have images their eyes turned in to some wonderful abstract art with some close up Eye Photography

Legendary Mendeley Open Day After-Party
The amazing Jerome introduced us to his world of swing, right in the heart of Mendeley HQ – we danced, we sang, and we’re mesmerized as Jerome showed of his Charleston grooves.

You can catch up on Tweets through our Storify or see highlights on our Flickr

Breaking down the wall of prostate cancer metastasis

Meet Lian Willetts, Postdoctoral Fellow, Dr. John Lewis Laboratory, Department of Oncology, University of Alberta and one of the standout stories of the recent Falling Walls 2015 conference. We had the pleasure of seeing her present her work twice during our trip to Berlin earlier this month, firstly during the fantastic Falling Walls Lab competition and then again as one of the three winners of Lab presenting her work at the main conference.

The Lab format offers excellent young academics and professionals the opportunity to present their outstanding ideas, research projects and initiatives. Each participant is asked to present his/her work in 3 minutes, which Lian managed in a clear, confident, concise manner.

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There is no better person to describe her work than Lian herself, so we reached out to get an overview of the groundbreaking research she is making great strides with.

Over a third of newly diagnosed cancer in North America will be prostate cancer, and 250,000 men and their families will receive this devastating new this year alone. Men do not die from cancer that stays in the prostate, they die when cancer cells spread from prostate to bones and lymph nodes. This deadliest aspect of cancer is called metastasis and this is true for many other types of aggressive cancer. Our current diagnostics for prostate cancer do not predict metastasis and our current treatments do not prevent metastasis. Without accurate and predicative diagnostics and preventative treatment, prostate cancer is still claiming 10% of all cancer-related death in men; and leaving a majority of diagnosed patients living with significantly reduced quality of life as results of aggressive treatments.

In order for cancer cells to metastasize, they have to be able to move. Our lab at the University of Alberta, has pioneered an imaging platform capable of capturing every movement of a spreading cancer cell. Using this platform, we discovered a panel of cell derived signals that indicate the switch in cancer cells, from growing to metastasizing, and we call them motility indicators. Take one of the indicators as an example, it is switched on in patients whose cancer spread 10 years earlier than patients who had it switch off according to their prostate biopsy.

Keeping the invasiveness of current diagnostics and patients’ quality of life in mind, our team developed a liquid biopsy platform to accurately analyze the level of these motility indicators using a single drop of blood. Applying this technology in a small cohort of patents we are able to accurately predict which patients’ cancer is metastatic, and whose cancer would remained non-invasive and stay in the prostate. Currently we are running clinical trials in collaboration with multiple Prostate Cancer centers around the world to further validate our technology. When validated we will have a non-invasive blood test to predict if your prostate cancer will metastasize. Many men get a diagnosis of prostate cancer that never would have killed them, but they still opt for radiation or surgery, which can severely compromise their quality of life. The biggest benefit of this test will be in determining which patients can feel comfortable making the decision to forgo aggressive treatment and just monitor their disease to live with it over the long term.

Lian also kindly shared her views on the importance of breaking out of the lab and attending events such as this, and also some insights on how she went about preparing for her talk.

In our lab at the University of Alberta, Edmonton, Alberta, Canada, I get to discover new things pretty much every day. I am surrounded by great scientists who help and challenge me on a daily basis. We are a very diverse group with projects and experience ranging from discovery research to clinical application. On a day-to-day basis, it is easy to focus on only the project you are working on and forget about the big picture of the lab. Participating in FWlab 2015 helped me to tie all the projects in my lab together. To share the breakthrough and the impact of our work to people with a wide variety of backgrounds, in less than 3 minutes, is an extremely challenging task for me. In the process of preparing for the selection process of regional competition, and in the end for the finale in Berlin, I practiced in front of anybody who cared to listen. This process helped me in refining my speech and organizing my thoughts. It was a great learning experience for better communication in the field of medical science research.

The best award I got for this year’s FWLab competition is to be part of the Falling Walls conference on the 25th anniversary of the fall of the Berlin Wall on Nov.9th. All speakers, regardless of their area of expertise, which ranged from aerospace and medical science to social and environmental issues, have been breaking down some of the toughest walls that humanity has been facing around the world. I am truly humbled and also very excited to be part of this prestigious, thought-provoking, and cutting edge experience in Berlin. The Falling Walls Foundation and A.T.Kearney had done a tremendous job organizing the event. I am truly grateful for the experience. I would recommend the FWLab experience to all researchers. It is a character building experience as well as a very effective training program for anyone who wants to learn how to communicate well.

Make sure you take a look the official website of The Alberta Prostate Cancer Research Initiative: http://apcari.ca

The first call for applications has already started for a new round of international FW Lab in 2016: http://falling-walls.com/lab/apply

The first will take place in Moscow on 8 December, the second in Hong Kong on 16 February 2016 with many more to follow. You can also sign up for the Lab Newsletter here: http://falling-walls.com/lab/newsletter

TReND in Africa: Sustainable development through higher education and scientific innovation.

scti1ZSTMendeley has a vision: to make science more open and to broaden access to scientific content where it can make a real difference to people’s lives. This is particularly relevant to developing countries and is thus the motivation to our support of Research4Life.

TReND in Africa is an organisation that is also working hard to improve scientific literacy and capacity in the developing countries of Africa. Since 2011, they have been organising a range of workshops and summer schools across the continent in the aim of bringing efficient, effective and low-cost research resources to labs, building research infrastructure, and supporting the scientific development of Africa.

Overcoming global inequality through education and local empowerment are well established worldwide development goals, however, existing projects often focus on primary and secondary education. Investment in tertiary, university level education is a key foundation towards sustainable development in which future primary and secondary teachers are educated locally to the highest standards.

In addition, scientific education is pivotal to the ability of societies to sustainably develop, innovate, and integrate within the global society. Developing nations too often need to import their solutions, innovations and patents from abroad, while losing their most capable minds to universities abroad. Therefore we, TReND in Africa, believe that providing top-level education to local elites in their home country is key to enabling developing societies to take their futures into their own hands.

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A 3-D printable micro-positioning device (“manipulator”) with an accuracy is in the order of 10s of microns.

In line with this, we run a wide range of educational activities, and support the establishment of top-level scientific facilities at several countries across the continent. We do this by leveraging large scale, low cost approaches to innovation and research – we make use of latest technologies and developments, ranging from free and open source software and hardware (FOSS / FOSH) approaches such as 3D printing, online teaching tools, and the use of the cost-effective yet powerful model organism, the fruit fly Drosophila.

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The pipette works by creating an air-tight chamber below a membrane (e.g. a lab glove) pushed upon by a piston at the end of a biro-filling (hence “Biro”pette). The accuracy can be in the order of ~5 microliters for a “P200”.

One such course is our upcoming Bioinformatics Approaches for Next Generation Sequencing (NGS) Analysis at ICIPE, Nairobi (Kenya). The aim of this course is to introduce a range of bioinformatics analysis techniques for dealing with NGS data, including an introduction to programming and analysis best practices. The workshop will start with an introduction to programming, mainly focusing on the R statistical programming language, and will then build on this foundation to introduce tools for data visualisation and analysis. We will introduce software development concepts such as databases and version control, and move on to cover NGS analysis topics including de novo genome and transcriptome assembly, ChIP-seq and RNA-seq, rare variant calling and population genetics. As with all our courses. there will be a focus on using freely available data and open source technologies, and encouraging open reproducible research.

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The “FlyPi” is an optical microscope designed for behavioural work with fruit flies, zebrafish or C. elegans

In addition to this, and to further support our students in their research careers, well will additionally cover subjects of science writing and science communication, covering the key topics from our previous Science Writing and Communication School in Zomba (Malawi) earlier this year that was run in partnership with the Training Centre in Communication. We are thankful to Mendeley for their sponsorship towards my (Dr Sarah Hoey‘s) travel to the course where I will teach on traditional science communication and introduce students to Mendeley as a free reference management and resource for colleague and international collaboration, as well as non-traditional science communication and how to talk to and engage with non-scientists about their research.

Selamat! October Advisor of the Month – Muhammad Basri Jafar

basri cropWe’re very pleased congratulate Muhammad Basri Jafar on being our November Advisor of the Month – Basri completed his Bachelors in English Education at the State University of Makassar, Indonesia, and continued with the Master Degree in Early Childhood Education at The Ohio State University, USA. He followed up with a PhD in Communication, Culture, and Languages at Victoria University, Australia.

Basri recently came to visit us at Mendeley HQ in London and told us about his research investigating students’ perception of Mendeley in academic writing, and of his amazing plans to organise the Mendeley International Symposium in Education (MISE) in Makassar next year.

How did you get into your field and what is your research story?
I get into my field in billiteracy development through the extensive reading and research over years and years. My current research on the Exploring Indonesian students’ perception on Mendeley reference management software in academic writing has been presented in the The 2nd International Conference on Information Technology, Computer, And Electrical Engineering (ICITACEE 2015) indexed by IEEExplore.

Where do you do your research/work the best? What kind of environment suits you?
Doing research with the community development looking at the literacy program under the UNESCO Project on National Literacy Building for Timor Leste and the UNESCO program on education for all is an exciting work for the my latest work experience as a UNESCO consultant of education for all for Timor Leste.

unm gedung2How long have you been on Mendeley and what were you using prior to Mendeley and how does Mendeley influence your research?
I have been on Mendeley for more than two years after experiencing using Endnote in my PhD work. Mendeley is a simple reference management software and easy to use in academic writing.

Why did you decide to become an Advisor and how are you involved with the program?
Since experiencing Mendeley easy to use in the academic writing then I decided to incorporate Mendeley in writing article, research paper and other publication.

What academic/researcher/librarian would you like to work with or meet, dead or alive?
Nancy Hornberger, a Professor in Pensylvania University, USA who pioneering the continua model of biliteracy.

Basri workshop cropWhat book are you reading at the moment and why?
Language Ecology authored by Dr. Mark Garner, the Roehampton University since this book inspired my research on ecological perspective on language use in South Sulawesi, Indonesia.

What is the best part about working in research?
The best part of working in research is the way we find the most up to date, and futuristic topics, as well as finding the dynamic of the data in the field to put into a comprehensive output of the research.

And the worst/most challenging part about working in research?
The most challenging part of research is working with the participants who are quite difficult to reach and communicate with for data collection.

What is the one thing you want people to know about Mendeley?
One thing that I want people to know about Mendeley is the way Mendeley help authors in citing and referencing simultaneously as well as highlighting feature for easy revision.

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"Follow your passion and your curiosity" – Meet Dr Sarah Noble, Planetary Geologist at NASA

NASA_logoIn July, some of us Mendeleyans had the amazing privilege to fly over to Washington to visit the NASA HQ for the New Horizons Pluto Flyby. During our trip, we had the chance to meet some of NASA’s scientists, one of whom is planetary geologist and a program scientist Sarah Noble. Sarah’s specific interested are in space weathering on environments such as the Moon, Mercury, and asteroids.

We recently got in contact with Sarah again, to speak with her about being a women in planetary geology.

Who are you and what do you do?

I am a program scientist at NASA Headquarters. In my job I have two main hats to wear, grants management and mission work. I manage several Research and Analysis (R&A) programs for the planetary science division, making sure that we find and fund the best planetary research. I also serve as a program scientist on missions, like the recent LADEE mission to the Moon, and I’m currently the Deputy Program Scientist for our next Mars rover, Mars 2020. A program scientist serves as a sort of liaison between HQ and the science team, it’s our job to make sure that the mission actually produces good science. I also get to do a little science once in a while, my research is mostly working with Apollo samples to understand the effects of space weathering on the properties of lunar rocks and soils.

Is this what you wanted to be, when you were growing up? If not, what did you want to become?

I think I always knew that I would work for NASA, though as a kid, of course, I wanted to be an astronaut, didn’t every kid?

What is your background and how did you get to where you are now?

I started my undergrad as an aerospace engineering major (because it was the only major with the word “space” in it), but quickly realized that I was much more interested in science than engineering. I switched to geology and fell in love with it, I also minored in both political science and art, because why not? I continued on the geology path in graduate school, specializing in planetary geology. After completing my PhD, I took a year or so off from science to scratch my political science itch and went to work for Congress. As an AAAS Science and Technology Policy Fellow, I worked as a committee staffer for the Space and Aeronautics subcommittee of the House Committee on Science and Technology. Then I went back to science, in what I like to call my “NASA-nomad phase, where in the span of a few years I worked at NASA Johnson Space Center, then NASA HQ, then NASA Marshall Space Flight Center, then NASA Goddard Space Flight Center, and finally back to NASA HQ.

Apart from being a lunar/planetary, what else are you/do you do?

In my spare time, I’m an artist. My day job tends to leak over into my art, most of my paintings are of the Moon and planets – they are so beautiful and amazing that I can’t help but paint them.

What are the best and worst parts about working in planetary geology?

In planetary science, we literally get to discover new worlds. Like NASA’s New Horizons mission that flew by Pluto this summer, giving us our very first pictures, and ESA’s Rosetta mission that has brought us incredible views of comet 67P/Churyumov–Gerasimenko. And every time, every new world, they are more amazing and incredible than we had imagined. But it’s a two-sided coin, space is hard, and vast, so our data is always limited. It took New Horizons nine and a half years to get to Pluto (and that’s just from launch, it doesn’t include the nearly three decades of work lobbying, planning, proposing, and building to get the mission off the ground), it will be a long time before we go back.

Is there a problem attracting girls/women to planetary science?

At the graduate school level, we are doing pretty well, about 40% of planetary grad students are women. Recruiting isn’t the problem, retaining is a bigger issue. Those numbers fall off precipitously among tenured faculty and senior researchers.

Have you had any role models or mentors in your field/during your career? If so, how did they support/encourage you?

My PhD advisor, Carle Pieters, was/is an amazing mentor.  She was a women in planetary science back when there weren’t any women in planetary science.  When I was her graduate student, her door was always open and whenever I would knock on it, no matter how busy she was (and believe me, she was always busy), she would give me her full attention. No phone calls, no quick glances at her computer, her full attention, which taught me that what I had to say was important and worthwhile.

Are there any particular challenges you’ve faced as a woman in STEM?

Imposter syndrome (the feeling that you are not as smart or qualified as those around you and that one day you will be found out) is something that I have struggled with. It turns out to be quite common among scientists, particularly female scientists, and actually I have found it to be very comforting and reassuring to realize that most of the people around me are struggling with the same feelings. One thing I try to remember to do when I mentor early career scientists is to talk about my failures, not just my successes, it’s important to realize that everybody fails sometimes and it’s not the end of the world. When we only talk about our successes it makes us appear superhuman, and that can be a tough standard to compare yourself to.

What has been your best experience, as a women in STEM?

I help run the Women in Planetary Sciences event at our annual meeting, the Lunar and Planetary Science Conference. I used to attend those events when I was a graduate student and it would be maybe twenty people crammed into someone hotel room swapping war stories. Now we fill up the big ballroom, well over a hundred women (and a few men) gathering to support each other and offer advice. Every year as the women are gathering, I take a minute to look around, take in the scene, and remember how far we’ve come.

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Women’s in Planetary Science Event 2012

Is there anything you wish you’d had, to support your career path?

My career path has not been a straight line, I have stepped away from doing research, first to work for Congress, then again at HQ, and I wish there had been more people telling me that that was okay, that getting a tenure-track faculty job wasn’t the only correct path, that I wasn’t “throwing away my science career”. I have no regrets about those decisions, they were the right ones for me, and I love my job. There are lots of ways to be a scientist, and all of them are valid career choices if you end up happy and fulfilled.

Which woman in STEM, dead or alive, do you most admire, and why?

I’m a big fan of Poppy Northcutt – She was the first women engineer to work in mission control and helped to design the return-to-Earth trajectory for Apollo 8. There’s a great picture of her in mission control, fashionably dressed, tousled blond hair, sitting in the midst of a sea of men in short-sleeved white shirts with ties and horn-rimmed glasses – the unofficial uniform of Apollo. One of these things is not like the others, clearly, and yet, everything about her body language and expression says she was right where she belonged, comfortable and confident. It’s hard to be the first, the only, and I love that she didn’t shy away from her “otherness”, didn’t buy herself a white shirt and horn-rimmed glasses.

What advice and encouragement can you offer to girls wanting to enter a career in STEM?

Follow your passion and your curiosity. Science is hard, but if you love it, it’s worth it.

What is your science/tech dream?

Part of me still wants to be an astronaut, or more to the point, I want to visit the Moon, do some field geology, see the Earth rise over the horizon.

 

If you are, or know, a women in STEM who would be interested in contributing to our Women in STEM blog series, then please email us! We’d love to here your story!

Put your research data online, with Mendeley Data!

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There’s an increasing drive in the scientific community to do more with the data that comes out of research. As funding bodies and governments begin to mandate that all research outcomes must be made available, researchers are looking for ways to publish their data, share it, and make it available for other researchers. The new Mendeley Data repository is designed to help them do exactly that.

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If you think about it, the output from scientific research hasn’t changed in the last 500 years or so,” said Joe Shell, Head of Research Data Management at Mendeley, “It’s always been about the research article, the meta of the experiment if you will, and takes the form of ‘we asked this question, here’s the answer’. What we want to do is enable researchers to show their working, and most importantly get credit for that.

citationsThe platform allows researchers to upload the raw data from their research, and give it a unique identifier (a versioned DOI), making that research citable (please see our FAQs to find out what a DOI is, and how this works in Mendeley Data). For partnering journal websites (so far ScienceDirect, Cellpress, and others in future), the article links to the research dataset on Mendeley Data, enabling readers to quickly drill down from a research article to the underlying data; while the dataset also links to the article.

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Researchers can also “privately” share their unpublished data with collaborators, and make available multiple versions of the data relating to a single research project, creating an evolving body of data. As science increasingly moves towards longitudinal studies, which involve repeated observations of the same variables over long periods of time, this will be invaluable.

Mendeley Data has been developed in close collaboration with the research community, to ensure it addresses their needs. “Since we kicked off the project we’ve been having a few users come in every week to test it out,” Joe said. “We’re getting really good feedback on usability”. The Mendeley Data team has been working closely with Mendeley Advisors, and other scientists and publishers to ensure the product serves their needs.

In line with that, and the Mendeley ethos, Mendeley Data is a free service and datasets are licenced under a choice of open licences. Research datasets are permanently archived with DANS (Data Archive and Networking Services) based in the Netherlands. Further, all the features of the web App will be available via a publicly available API (Application Programming Interface) enabling other Apps to build on top of, and interface with, the research data repository. The API will be released in the next few weeks, and you can find out about it first by following the Mendeley API on Twitter.

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We’re also proud to announce that Mendeley Data will be collaborating with the Hivebench Electronic Lab Notebook, in the aim of helping researchers to capture and archive data from their experiments, as they collect it in the lab, providing a truly end to end data management solution. This integration is a great example of how one can use the Mendeley Data API.

Do you collect, share or consume research data? We want to make something that serves your needs – we would be delighted to hear your feedback and ideas for Mendeley Data! Please follow the feedback button on the bottom of the Mendeley Data page, comment on this blog or write to support@mendeley.com.

Falling Walls – The International Conference on Future Breakthroughs in Science and Society

For the last two years, Mendeley and Elsevier have been partners of the Falling Walls Conference. Next week, we’ll be heading to the Falling Walls Lab in Berlin and tweeting live from #fallingwalls15 so follow @mendeley_com and @Falling_Walls to stay updated.

http://livestream.com/accounts/1153663/events/4410710/player?width=560&height=315&autoPlay=true&mute=false

In the run up, we’ve explored the event’s beginnings and how it continues to bring together young professionals from different cultures and disciplines, who share the same passion for discovery and innovation.

What is it?
The Falling Walls foundation was established on the 20th anniversary of the fall of the Berlin wall. Inspired by this world-changing event on 9 November 1989, the question at the heart of the gathering is: Which walls will fall next?

Since its symbolic beginning, the conference has expanded its sphere of influence. Extensions to the original programme now exist, including the Lab, an opportunity for the brightest minds to showcase their breakthroughs and hone their science communication skills.

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The Lab aims to build and promote interdisciplinary connections between young academics, entrepreneurs and professionals from all fields, and in the lead-up to the Lab Finale in Berlin, 36 qualifying events in 29 countries took place in 2015. The three winners of the Berlin Lab will get the chance to present their ideas once more on the grand stage of the Falling Walls Conference, to an international audience.

Why is it different?
Falling Walls gathers the brightest minds from all over the world. Rarely is it possible to learn and share with as many world leaders in their field, all in one place: ‘Leaders at the intellectual frontier’, describes Scientific American.

Similarly, the Lab is not just any science slam; it incorporates a unique mixture of competition, assertiveness and real curiosity in what other people are doing.

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Why should I get involved?
Get inspired – Participating in the Lab can give young researchers and innovators visibility on a global stage, but above all it will offer inspiration. Past winning ideas are as diverse as they are exciting. Last year winning projects included ‘the Lorm hand’ – a communication device enabling deaf-blind people to connect with others using social media, technology allowing salt to be filtered out of water and sold on, making the treatment of wastewater profitable, and a project to induce fat cells to secrete insulin, so that type 1 diabetes patients would no longer depend on insulin injections in the future.

Network – Even more so than the conference itself, The Lab is an ideal place to network with like-minded people who want to share their passion and their work with you. Find who works near you, and with whom you would like to collaborate. After the event, stay in touch with Falling Walls and the conference alumni through Facebook, Twitter and Vimeo. Keep them updated with your ideas and get a chance to get your work ‘In the Spotlight’: a new feature in store for this year’s edition, which will document and promote the breakthroughs of conference alumni all over the world.

Hone your outreach skills – Transforming your research into a 3-minute long ‘elevator pitch’ is a challenging restriction. Drawing a compelling presentation out of a complex project will bring out the most essential aspects of your idea: What is it? How does it work? What problem does it solve? Having a strong answer to these questions will help you make your idea sound exciting to people – which is the beginning of success.

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We’ll be providing updates from Berlin next week, and will be profiling the  winning Lab projects in more detail, so watch this space. You’ll also be able to watch the live stream. In the meantime, check out the Falling Walls blog and watch some videos to find out about previous winning ideas to get your innovative, creative brains working.