Meet the API Team!

Keeping science open has always been part of Mendeley’s mission. There are many ways we achieve this, but our developer portal throws opens the Mendeley platform for developers to create and build tools to make researchers’ lives easier using Application Programming Interfaces — known as APIs. It is thanks to the Mendeley API that some of your favorite Mendeley third-party apps exist, like KinSync, PaperShip and Scholarley, to name a few. Even higher education is getting into the API game.

And now our API website has a fresh new look and a beta release. The team is currently working with a technical writer to improve the documentation, and are also busy trying to get SDKs out for mobile and other languages for a major release sometime later this year.

Think you’re ready to hack? Know any code monkeys interested in building tools to make researchers’ lives easier? Visit our Dev Portal to learn more and follow our brand-new Mendeley API blog. And meet the team behind the API in this months’ “Meet the Mendeley Team.”

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Joyce Stack – Developer Outreach

joyce-marie (1)Joyce Stack completed a BSc. (Hons) Computer Science from The Open University while working in a startup in Co. Cork, Ireland. She moved to London in 2005 to join one of the City’s leading exponents of agile techniques at that time to work as a Java Developer. She is now working in the Developer Outreach role in Mendeley.
Connect with her on Twitter @MendeleyStack

How do you describe your role on the API Team?

Mainly my role is to be the “physical manifestation” of the API at conferences, meetups and hackathons.

Also, my role is to ensure we are engaging with all our clients and potential clients on the main social channels e.g. Twitter, Stack Overflow, blogs, etc.

My main responsibilities are to build up an excellent developer experience and support people in building great apps and demonstrating the value of our dataset to new potential clients. Basically, engaging with our developer community to drive adoption. Also, I’m the conduit between clients, both internal and external into the platform team and product teams, from an API perspective.

What is your favourite part about working for Mendeley?

I get fed a lot. There is always a fridge full of food, ice-cream, fruit and drinks.

Primarily, though I was never one for endless iterations of work, I like the variety in this role. I get to wear many hats, e.g. product owner, support person, coder, debugger, marketing, blogger.

What do you enjoy doing in your free time?
Take trips away to new places (8 so far this year), drinking brown beer and keeping fit with boxercise, spinning and weights.

Matt Thomson – Senior Software Developer

Matt ThompsonMatt was born and grew up in Scunthorpe in the North of England. After graduating with an MMath from the University of Cambridge, he moved to London to join a telecommunications software provider, before joining the platform team at Mendeley in 2012.

How do you describe your role on the API Team?

I’m one of the developers of the Mendeley API, responsible for building new features, keeping the API running smoothly, and making sure that it meets the needs of all of our client developers, both internally and externally.

What is your favourite part about working for Mendeley?

The problems are challenging, our technology stack is exciting, and the people are friendly and supportive. I bet everyone says “the people”, though.

What do you enjoy doing in your free time?

I’m a big fan of live comedy, and performed improvised comedy for a number of years, most notably at the Edinburgh Fringe with London’s (now defunct) Fat Kitten Improv. I also enjoy exploring London’s green spaces and pubs, and am a long-suffering follower of Scunthorpe United.

Dr David Ingram —Principal Engineer

David’s background is a mix between working in the computer industry and academia — he has a PhD in operating systems, did post doc research in distributed systems, and worked for both AT&T Labs and Google.

How do you describe your role on the API Team?David Ingram

My role is currently to look at the API both from within and from external client perspectives. I try to make sure the most important client needs are met while keeping the implementation clean and maintainable.

What is your favourite part about working for Mendeley?

The best thing about Mendeley is our goal, to improve the productivity of researchers everywhere.

What do you enjoy doing in your free time?

In my free time when I’m not hacking, I teach dance.

Congrats August Advisor of the Month — Vicky Pyne!

Congratulations and thank you to Vicky Pyne!

Vicky recently participated in a video for our Women in STEM series (you can see these stories on our YouTube channel, including some of our own Mendeley employees), and we loved her passion for the topic, both as a medical student and someone with a decade of experience of working for technology companies.

Luckily for us, she has the same passion for Mendeley!

Vicky is in her final year of medical school at the University of Bristol. “My major research days are still ahead of me,” said Vicky, who has already done several projects throughout her university career, including looking at the efficacy of bariatric surgery, the aetiology and management of a rare obstetric condition called ‘Chronic Histiocytic Intervillositis,’ and a ‘big data’ study on the performance of mature medical students as they become mature junior doctors.

 

Vicky Pyne

How long have you been on Mendeley?
Since my second year [of medical school] in 2011.

What were you using prior to Mendeley?
EndNote and the inbuilt MS Word References tool.

How does Mendeley influence your research?
Mendeley speeds up my research by allowing me to quickly save papers to a place where I can easily find them in the future.

It’s also made a huge difference in terms of creation of my references as well – this used to be such a headache and wasted a lot of time that could be have been spent doing more useful things to improve the quality of my work.

It’s a more subtle change but I think it’s also allowed me to review more papers simultaneously to truly integrate their messages into my own work in a way that just having the files stored on my hard-drive wouldn’t give me. Finally, I imagine its saved my printing costs as well as there’s no need to print and manually highlight stuff!

Why did you decide to become an Advisor?
When I first found the tool, it took almost no time to realise that this was going to be really useful. I thought it’d be good to be more involved in it and it’s nice to get the ‘Pro’ features for free!

How have you been spreading the word about Mendeley?
I share the link on the Facebook group for my year and always point it out to friends when our big yearly projects come around. I offer support to anyone who’s having problems – although they rarely need it!

What book are you reading at the moment and why?
I’m currently reading “The Book Thief” by Markus Zusak. For most of the academic year, I don’t get much chance to read for pleasure but I like to get into some books when the summer holidays come around.

Any fun fact people might be surprised to learn about you?
I started dancing at the age of 3 and almost went to stage school at the age of 11. I sometimes wonder how different my life would have been if I’d gone down that route instead!

What is the best part about being a researcher?
You find yourself asking a question and you are able to go and find out the answer – sometimes it’s rather surprising and just creates a whole set of new questions. Learning and exploring is what life is all about!

And the worst?
It can be frustrating when you can’t access a paper you need as it’s behind a paywall – I understand that journals need to make money to survive but it feels there should be another way to do this that doesn’t hinder further research.

What is the one thing you want people to know about Mendeley?
That it just works. It’s simple to use and I can trust it completely. I’m not wasting time trying to learn a tool when I should be learning about my field of study.

Mendeley Desktop 1.12 Available Now

We’re very pleased to announce that Mendeley Desktop 1.12 is now available, and will appearing as an auto-update for all users over the next couple of days.  This release resolves two popular user requests, as well as numerous bug fixes.

Print PDFs from Mendeley Desktop

Printing has been our #2 user request for some time (second to an Android app, which is currently in progress), so it’s great to be able to deliver.  To print a PDF, simply open it in a Mendeley reader tab, select the “File” menu at the top, and click “Print…” or press CTRL+P (CMD+P on MacOS).

PrintPDF

From there, you have some standard print options, and the option to include or exclude your annotations.  When you include annotations, sticky notes will have a marker to the side of the document, with the full note text appended to the end of the document, in the same format that our “Export PDF with annotations” feature uses currently.

PrintPDF1

Mark as read

Automatically marking documents as read was previously quite aggressive in Mendeley Desktop.  If you opened a PDF in a tab, it was marked as read instantly.  This meant that it wasn’t a very accurate indicator of whether a document had actually been “read” or not, only opened.  We had a lot of feedback related to this, and have redesigned this system in an attempt to make it a little bit smarter.

Now the document is only marked as read once it has been scrolled most of the way through and has been opened for a reasonable period of time, dependent on the length of the document.  Without interfacing with your brain, we can’t actually check whether you’ve read a document or not, so in the case where this doesn’t quite catch something, you can still change the read/unread status of a document manually by toggling the read/unread dot.

MarkAsRead

With this change made, we feel comfortable adding read/unread support to our Mobile and web applications in the near future also.

What’s next?

The majority of our time recently has been spent supporting a company-wide migration away from numerous private APIs and services, to having all our apps communicate and sync using our new public API (currently in beta).  This is an absolutely huge piece of work, but when it’s done and stabilised, will result in a much faster and more stable base for us to iterate on and bring you value faster.  We are expecting to start rolling out this new version around September/October.

Before then though, we’ll be doing a small release with some fixes to the citation plugins, and the ability to import MEDLINE files from PubMed.  This has been another long-standing request for people who need to do systematic literature reviews across hundreds or even thousands of PubMed articles at a time.

If you’re interested in helping us test new features, you can opt-in to experimental releases via the “Help” menu in Mendeley Desktop. (you can opt out at any time to return to the last stable release).  Please report any issues you find to support@mendeley.com

Thanks a lot.

Crowdfunding Innovative Water Treatment Research

Community Water Project 2Mendeley is proud to help spread the word about how research makes a positive impact in people’s lives, which is why we were really happy to work more closely with Elsevier in Research4Life. At its core, research is about making the world a better place, and technology is a  key way of enabling this. As part of our series of guest blog posts highlighting interesting ways in which that happens, this time we bring you the story of Jay, Viv and Kirsten, 3 young researchers from the University of Southern California, who have used crowdfunding to take their life-saving solution to communities in Rwanda.

By Jay Todd Max, co-founder of the Community Water Project

Next month, my research team and I are flying to Rwanda to build innovative water treatment systems we have been designing for the past three years. While we were earning our Bachelors and Masters Degrees in Engineering at the University of Southern California, Viv Pitter, Kirsten Rice and I were in the USC labs, researching into different innovative water treatment methods. The result is that we have created a new model of water treatment systems, tailored specifically to the needs and resources of rural communities in developing countries. This September we will make those designs a reality.

Having access to clean water is obviously a huge issue for millions of people around the world. The communities that we are targeting are ones who have access to dirty water, but no means of cleaning it. Typically these are rural communities that also do not have access to sophisticated water treatment technologies and typically do not have the technical know-how for maintaining complex water treatment systems. Our design is incredibly low-tech and uses only the natural resources found locally in these communities. It is essentially a large concrete chamber filled with gravel and sand. It traps the dirt and uses the naturally occurring micro-organisms to break down and remove all of the dangerous contaminants. Because the materials are local and there are no moving parts, the system is incredibly easy to maintain and operate.

 

Community Water Project 1

But there’s more. Many projects fail for social/cultural reasons rather than purely technical ones. Because of this, our implementation strategy diverges from usual aid models. Typically, when aid groups enter a community, they prescribe a specific technology that they have shipped from far away, install it without much community buy-in, and then leave, patting themselves on the back for a job well done. Unfortunately, the majority of these projects fall out of use and into disrepair within the first 5 years. Our implementation strategy, however, avoids this fate in two main ways. Firstly, our primary focus is on community engagement and buy-in. After all, it is the people we are interested in helping. The village leaders of Bwana, Rwanda are already eager to help make their new water systems a reality. Secondly, the systems will be monetized. The village leaders are in the process of selecting individuals from within the community who will become the owner/operators of these systems. They will charge a small fee for each container of water that gets dispensed. This money will go toward the maintenance and repair of the system, and will also act as compensation for the owner’s work. Because the owners are getting paid for their work, there will always be someone in charge of keeping the systems in operating condition.

We believe that our design, combined with our implementation strategy, have the potential to dramatically improve the success and sustainability of water projects around the world. Our model will not be validated, however, unless we take the first step of building the first ones in Rwanda this September. That is why it has been so helpful these past few weeks when donations have come from all over to raise more than $15,000 of our $20,000 fundraising goal on IndieGoGo. All of the communities that have supported the IndieGoGo campaign by sharing the link and by donating are really enabling us to prove out our water treatment concept. They are making it possible to do so much good for the community in Rwanda and possibly for water projects around the world. It really is a case of whole communities coming together to help other whole communities. It’s all made possible by crowd-sourcing funds, and it’s all for the purpose of proving out research that will improve people’s lives. If you’d like to help support the campaign or receive updates on the project’s progress, be sure to visit our campaign page!

Do you have your own stories of using crowdfunding or other social media technologies and platforms to advance your research? Join the discussion on our Crowdfunding Group on Mendeley or leave a comment below!

 

 

 

"You Need Perseverance to realise your dreams" Meet Adriana Ocampo, Lead Program Executive at NASA’s New Frontier’s Program

Adriana Ocampo

Interview by Claire van den Broek

“I used to go to the roof of my house in Buenos Aires and dream about the stars,” recalls Adriana Ocampo. And as Science Program Manager at NASA, it’s probably fair to say that she’s one of those people who tends to turn their dreams into reality.

I tell students that they must have the courage to move forward with their dreams and believe in themselves. I have a mnemonic that I use, with the word STARS:

Smile, life is a great adventure

Transcend to triumph over the negative

Aspire to be the best

Resolve to be true to your heart

Success comes to those that never give up on their dreams

Born in Colombia and raised in Argentina, as a young girl she would sit with her dog on the roof of her house and spend hours wondering what those points of light actually were, and knew that science was her calling.

“Our parents always encouraged our imagination and dreaming big. I remember the moon landing. I was still in Argentina, a very young kid, July 20th, 1969, and here were humans walking in another world. I was completely fascinated by that, and NASA was the agency that enabled that. I thought: That’s where I can make my dreams come true! I would steal pots and pans from my mother’s kitchen, and my father was an electronics technician. I would make my own space models and draw lunar colonies. I even wrote to NASA, in Spanish. And somehow that letter got to somebody’s desk and they responded. That meant so much to me, that somebody actually took the time.”

When she emigrated to the United States with her family, as soon as she got off the plane in Los Angeles her first question was “Donde esta NASA? (which translates to where is NASA?”, since she did not know any English yet). And at her high school she joined the Space Exploration Post #509 who were sponsored by the Jet Propulsion Laboratory, NASA’s centre of excellence for exploration of the Solar System.

“As soon as I learned they were looking for volunteers, I immediately stood up and in my broken English said I wanted to do this. To me this was like Disneyland. Here where these people, engineers and scientists, that donated their time to provide guidance and to educate us about space exploration. At the JPL auditorium we worked with mentors who gave lectures, and eventually started doing hands-on projects. We constructed a telecommunication station to communicate with weather satellites. For the first time I experienced what it’s like to work together, and to lead a team. We had to do all these reports, and present them to the Director of JPL ,who was Dr W. Pickering at that time. It was a big responsibility. None of us had even graduated from high school yet!”

She stresses the huge importance of having mentors, such as the very bright JPL engineer Michael Kaiserman, who was the Lead Advisor for the Space Explorer Post. He gave generously his time to provide kids those opportunities and inspire them. Adriana fondly remembers the volunteer engineer and scientists who opened the doors of NASA space exploration to her.

“Thanks to the JPL mentors the Space Exploration Post was able to go on space science trips. We went to see the last Apollo launch, Apollo 17, together. We collected money by washing cars, selling cookies, etc. Those are the memories that mark you for life and I’ve been extraordinarily fortunate to have being given the opportunity to grow up in such an environment. I started working at JPL from the lowest possible position, as a kid in a summer program, and someone took me on and paid me to be his assistant after I graduated from high school. And when I started going to college JPL provided me with the opportunity to continue working part-time, which facilitated for me to pay for my own education.” 

But was it difficult to make it through the ranks as a woman, and did she ever feel out of place?

“Obviously there were not many girls, and on top of being a girl I spoke English with a “funny” accent, so I was kind of a double minority. But they were really open and gave me a chance. Through my experience at NASA, I’ve seen how they truly look for talent. If you bring a good idea to the table, they listen to it, and if it’s a good idea it moves forward. One of the good things I learned here is that mistakes are part of the process to mission success. When we have problems with a mission, it’s part of learning how to do it better. Blame is not part of NASA vocabulary, nor is problem, we use instead the word “challenge”. It’s about: “How can we learn to do it better next time?” That’s something that really helps build confidence, trust, and a team spirit.”

These days she spends as much time as possible helping to create the next generation of scientists and explorers, trying give young girls some of that same inspiration and support.

“It is truly important, having somebody who is a mentor, developing that relationship and seeing that a young women could see herself working in this team, having someone who believes in her. Just responding to those dreams, sometimes a thing as simple as taking the time to respond to a message, as someone once did for me, can make a tremendous difference.”

For example, she participated in a Shadow Program organised by the Society of Women Engineers, where young girls come and spend a day with people such as Adriana, to get a flavour of what life at NASA is like, and develop a relationship and dialogue which helps to guide and support them in their STEM career path. It is a well-acknowledged problem that a high number of women are lost as they make their way up the career ladder in those fields, something that Professor Athene Donald from the University of Cambridge defined as the “leaky pipeline”

“Right now we’re facing a generation of people who are retiring. We need more talent in science and engineering, so that’s one of our challenges. But for every space mission that NASA launches, one percentile of their budget is allocated to education and public outreach. Those programs help kids get involved, but they also help teachers. We need to inspire not only the students, but the teachers and the parents. Less than 1% of science teachers actually have a science degree, even at Bachelor’s level. So you need to incentivize, and educate them, so they can build that sense of “wonder” in students.”

This is not easy though, specially with women, and those, like her, who come from minority backgrounds. “I remember a case where we had a very talented young woman who had a full scholarship to Stanford, to become an engineer. Her parents wouldn’t let her go, because San Francisco was too far away. Many parents of girls from minority families don’t see becoming an astronomer, mathematician, or physicist as a career path. They think they won’t be able to support themselves.

“We need to change that paradox in society, science can be fun and is necessary for the future of the species.I strongly believe that everyone is a scientist. Anybody who is a good observer and uses her or his imagination is a scientist. We need to develop that excitement about science and space exploration into the parents, the family and society. During the International Year of Astronomy  I organized an event for 24,000 students and the whole theme was ‘space adventures’ and making science hands on and fun. At the end, we gave each student an oath, the essence of which was that science is to be used for the good of humanity. We all share the responsibility for science and technology to be use to benefit society.”

At Mendeley we’re very keen to support female researchers (nothing against the male ones of course!) in their pursuit of STEM careers, and are proud to have a number of fantastic women in our team. In fact, you can hear a few of their stories about how they got into technology on our YouTube channel. If you’re interested in the subject, or are working to help young girls get inspired to follow those careers, you might like to check out the Every Girl Digital community on Facebook and join our dedicated Mendeley Women in STEM group!