Posts Tagged ‘PLoS’

15 March 2013 by Alice Bonasio

research miscellanea academic life  Science Show and tell

Back in 2006, Moshe Pritsker thought to use video technology to capture and transmit the intricacies of life science research, facilitating both the understanding and reproduction of experiments and techniques. This idea of “letting scientists look over each other’s shoulders” led to the launch of JoVE, the Journal of Visualized Experiments, which is peer reviewed and PubMed-indexed. As a scientific journal, it has an editorial board and hierarchical structure, and ensures consistent quality of its video content by maintaining a network of professional videographers spread across major science centres. Scientists from leading institutions participate by submitting video articles that visualize their experiments.

As science advances, processes and tools also become more complex. Procedures and techniques such as growing stem cells are tremendously complicated and difficult to accurately follow with just a set of written instructions, and visiting labs in person can be a very expensive alternative beyond the resources of many researchers. This challenge of poor experiment reproducibility is what JoVE tries to address, claiming that traditional written and static picture-based print journals are no longer sufficient to accurately convey the intricacies of modern research. Translating findings from the bench to clinical therapies rely on the rapid transfer of knowledge within the research community.

This month’s issue features an article by Connors et al of Massachusetts Eye & Ear and Harvard Medical School, who have developed an audio-based virtual environment simulator that uses audio cues and a video game context to build cognitive maps of three-dimensional spaces and help blind people improve their navigation skills. Other videos include a new non-invasive method being developed at the Massachusetts General Hospital and Harvard Medical School for measuring brain metabolism in new-born babies, and a demonstration of how a biopolymer gel derived from polysaccharides found in brown algae can help patients with heart failure.

There are also other companies operating in the scientific video space, but what they offer is a looser user-generated environment. One of the most successful of those is SciVee, which is backed by the Public Library of Science and features videos that sit alongside traditional journal papers.

So is this the new frontier? Are we actually looking at a situation where most researchers will feel comfortable communicating with their peers using video? Has the scientific community truly given its blessing to such new approaches to science communication? We’d love to hear your thoughts.

12 December 2011 by William

There’s a great discussion that’s been going on over the past couple weeks on the LIBLICENSE-L mailing list. I particularly liked what one of the participants, Jan Velterop (CEO, Acqknowledge) had to say, so I asked him if he would like to contribute a guest post and he graciously agreed: (more…)

16 November 2011 by Jason Hoyt

The results are in! Mendeley and PLoS staff both voted on which apps could have the greatest impact on science. We actually had a tie and decided to keep the binary going and include 11 apps to make it a Top 10+1. These apps will now be presented to our worthy judges to determine the overall winner, to be announced November 30th. Our expert judges are: Werner Vogels (Amazon CTO), John Wilbanks (VP for Science at Creative Commons), James Powell (Thomson Reuters CTO), Juan Enriquez (Managing Directo of Excel Venture Management), and Tim O’Reilly (Founder of O’Reilly Media).

There were so many great apps, that we also decided to throw in three honorable mentions, who didn’t quite make it into the Top 10+1, but were crowd pleasers. See below the Top 10+1 to find out who made it to the honorable mention list.

More details on the Top 10+1 apps and the Binary Battle are up on our API developer portal, so check that out. And without further ado, here are the Top 10+1 apps…  (more…)

3 November 2011 by Jason Hoyt

This is the fourth and final part announcing the top 40-ish Apps entered into the Mendeley-PLoS Binary Battle. To see the first batch of apps, check out Day One. And Day Two with the second batch is here. And Day Three is here.

As a reminder, the top 10 apps will be announced in two weeks and the overall winners will be announced November 30th

Now, in order of entry received date, the final batch of apps to benefit science: (more…)

2 November 2011 by Jason Hoyt

This is the third of four parts announcing the top 40-ish Apps entered into the Mendeley-PLoS Binary Battle. To see the first batch of apps, check out Day One. And Day Two with the second batch is here. Check back tomorrow for the final batch of apps.

As a reminder, the top 10 apps will be announced in two weeks and the overall winners will be announced November 30th

Now, in order of entry received date, the third batch of apps to benefit science: (more…)

1 November 2011 by Jason Hoyt

This is the second of four parts announcing the top 40-ish Apps entered into the Mendeley-PLoS Binary Battle. To see the first batch of ten apps, check out Day One. Check back tomorrow for the next batch of 10 apps.

As a reminder, the top 10 apps will be announced in two weeks and the overall winners will be announced November 30th

Now, in order of entry received date, the second batch of 10 out of 40 apps to benefit science: (more…)

31 October 2011 by Jason Hoyt

The Mendeley-PLoS Binary Battle to create applications that benefit science is now 30 days in. While more than 1000 developers are now using Mendeley’s APIs, we’re going to mention the 40-or-so official entries into the Binary Battle. This will be a four part series, in which about 10 apps are revealed in each segment. Check back tomorrow for the next 10 apps.

We’ll reveal the Top 10 apps in two weeks. The Top 10 apps will go on to be judged by a panel of experts: Werner Vogels (Amazon CTO), John Wilbanks (VP for Science at Creative Commons), James Powell (Thomson Reuters CTO), Juan Enriquez (Managing Directo of Excel Venture Management), and Tim O’Reilly (Founder of O’Reilly Media).

Winners announced November 30th!

Now, in order of entry received date along with the developer descriptions, here are the first 10 of 40-ish: (more…)

22 September 2011 by Jason Hoyt

 

The deadline to enter your application to the Binary Battle is September 30th, 2011. Go here for the official entry form.

Hopefully you were already aware of the Binary Battle, but if not, here’s a brief rundown….

We, Mendeley, teamed up with the world’s largest Open Access publisher PLoS, to create a call for apps that help researchers. To sweeten the incentive, we also put up some nice cash prizes and the opportunity for the top 10 apps to be judged by some high profile names. 

Great Prizes

The overall grand prize is worth $10,001 and $1,000 of AWS credits donated by the great folks at Amazon. Huge runner up prizes are up for grabs and anyone who officially enters the contest will get $50 of AWS credits from Amazon just for entering! 

developer resources  Last Call Mendeley/PLoS App Contest Sep 30th

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19 August 2011 by William

A little over a week ago, PLoS and Mendeley got together to issue a “Call for Apps” to the scientific community. We have now collected some really great ideas which we’d like to pass along to the developer community. Some of the ideas are Binary Battle-ready, while others are just kinda cool, so take a look at the list and see if anything inspires you.

Some interesting Binary Battle-ready ideas are: (more…)

2 August 2011 by William

Research is hard enough without having to deal with crappy software and programs that don’t talk to one another. Part of the problem is that many people who write great code aren’t scientists, so they don’t know what scientists need. We’d like to solve that problem, so we’ve teamed up with the Public Library of Science to issue a “Call for Apps“.

If you have a great idea for a scientific app but lack the coding skills to develop it, you’re in luck! Submit your app idea by August 10th (12pm PDT) and we’ll present it to developers who have the skills to make your dream a reality using the PLoS and Mendeley APIs, which are rich sources of data on scientific trends and stats.

Here are some ideas:

What’s the thing you wish someone would make an app for? We’ve got the data, you’ve got the idea, and chances are there’s someone who wants to bring your idea to life, if they only knew what you needed.

How To Submit Your App Idea:

  • Complete the Binary Battle App Idea Submission form
  • Leave a comment on this blog post with your ideas
  • or just tweet your idea using the #binarybattle hashtag

If you’re a developer, you may wish to enter your completed app in the Binary Battle.